Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs12203960 | chr6:161599406 | G/T | 0 | 178 | 15.57 | 14.03 | 1.03 | KM Plot |
| PAAD | rs12205312 | chr6:45310265 | C/G | 0.000164 | 173 | 12.2 | 16.1 | 16.48 | KM Plot |
| PAAD | rs12207169 | chr6:65775758 | C/T | 0 | 177 | 15.62 | 13.6 | 0.4 | KM Plot |
| PAAD | rs12221488 | chr11:125592843 | G/T | 9.4E-5 | 178 | 16.1 | 14.18 | 5.03 | KM Plot |
| PAAD | rs12223466 | chr11:125608724 | G/C | 0.0001 | 178 | 15.95 | 12.2 | 4.1 | KM Plot |
| PAAD | rs12223842 | chr11:125570227 | T/A | 4.48E-5 | 177 | 16.05 | 11.6 | 4.1 | KM Plot |
| PAAD | rs12224222 | chr11:49699461 | A/G | 2.4E-5 | 174 | 15.4 | 15.67 | 0.4 | KM Plot |
| PAAD | rs12224646 | chr11:125708293 | T/G | 5.8E-5 | 178 | 15.95 | 12.2 | 4.1 | KM Plot |
| PAAD | rs12224830 | chr11:125608693 | T/C | 0.0001 | 178 | 15.95 | 12.2 | 4.1 | KM Plot |
| PAAD | rs12224832 | chr11:125595101 | A/C | 2.69E-6 | 178 | 16.1 | 14.37 | 4.9 | KM Plot |
| PAAD | rs12225091 | chr11:125570535 | A/G | 0.000102 | 176 | 16.1 | 14.18 | 5.03 | KM Plot |
| PAAD | rs12225265 | chr11:125704762 | T/G | 5.8E-5 | 178 | 15.95 | 12.2 | 4.1 | KM Plot |
| PAAD | rs12288034 | chr11:125570941 | A/T | 3.51E-5 | 177 | 15.82 | 12.2 | 3.9 | KM Plot |
| PAAD | rs1235275 | chr21:37024366 | C/G | 2.29E-6 | 178 | 5.52 | 17.4 | 15.13 | KM Plot |
| PAAD | rs1235276 | chr21:37023594 | C/T | 2.29E-6 | 178 | 5.52 | 17.4 | 15.13 | KM Plot |